Danko, Charles: search on Z-Library

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1

Bayesian inference of ancient human demography from individual genome sequences

Gronau, Ilan, Hubisz, Melissa J, Gulko, Brad, Danko, Charles G, Siepel, Adam

Journal:

Nature Genetics

Year:

2011

Language:

english

File:

PDF, 501 KB

english, 2011

2

Chromatin run-on and sequencing maps the transcriptional regulatory landscape of glioblastoma multiforme

Chu, Tinyi, Rice, Edward J., Booth, Gregory T., Salamanca, H. Hans, Wang, Zhong, Core, Leighton J., Longo, Sharon L., Corona, Robert J., Chin, Lawrence S., Lis, John T., Kwak, Hojoong, Danko, Charles

Journal:

Nature Genetics

Year:

2018

Language:

english

File:

PDF, 6.60 MB

english, 2018

3

An empirical evaluation of the Gilly-Enis updated household life cycle model

William D. Danko, Charles M. Schaninger

Journal:

Journal of Business Research

Year:

1990

Language:

english

File:

PDF, 1.36 MB

english, 1990

4

Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq)

Mahat, Dig Bijay, Kwak, Hojoong, Booth, Gregory T, Jonkers, Iris H, Danko, Charles G, Patel, Ravi K, Waters, Colin T, Munson, Katie, Core, Leighton J, Lis, John T

Journal:

Nature Protocols

Year:

2016

Language:

english

File:

PDF, 1.38 MB

english, 2016

5

Ultrastructural changes in cardiac myocytes from Boxer dogs with arrhythmogenic right ventricular cardiomyopathy

Eva M. Oxford, Charles G. Danko, Bruce G. Kornreich, Karen Maass, Shari A. Hemsley, Dima Raskolnikov, Philip R. Fox, Mario Delmar, N. Sydney Moïse

Journal:

Journal of Veterinary Cardiology

Year:

2011

Language:

english

File:

PDF, 1.35 MB

english, 2011

6

Signaling Pathways Differentially Affect RNA Polymerase II Initiation, Pausing, and Elongation Rate in Cells

Danko, Charles G., Hah, Nasun, Luo, Xin, Martins, André L., Core, Leighton, Lis, John T., Siepel, Adam, Kraus, W. Lee

Journal:

Year:

2013

Language:

english

File:

PDF, 1.47 MB

english, 2013

7

Nascent RNA sequencing reveals a dynamic global transcriptional response at genes and enhancers to the natural medicinal compound celastrol

Dukler, Noah, Booth, Gregory T., Huang, Yi-Fei, Tippens, Nathaniel, Waters, Colin T., Danko, Charles G., Lis, John T., Siepel, Adam

Journal:

Genome Research

Year:

2017

Language:

english

File:

PDF, 7.88 MB

english, 2017

8

Discovering Transcriptional Regulatory Elements From Run-On and Sequencing Data Using the Web-Based dREG Gateway

Chu, Tinyi, Wang, Zhong, Chou, Shao-Pei, Danko, Charles G.

Journal:

Current Protocols in Bioinformatics

Year:

2018

Language:

english

File:

PDF, 1.36 MB

english, 2018

9

Corrigendum: Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution

Blumberg, Amit, Rice, Edward J., Kundaje, Anshul, Danko, Charles G., Mishmar, Dan

Journal:

Genome Research

Year:

2019

Language:

english

File:

PDF, 123 KB

english, 2019

10

Myositis associated autoantibodies detected using a novel recombinant protein blotting: clinical associations

Charles, P J, Lundberg, I E, Paterson, E, Ekholm, L, Danko, K, Putova, I, Vencovsky, J

Journal:

Annals of the Rheumatic Diseases

Year:

2010

Language:

english

File:

PDF, 76 KB

english, 2010

11

Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution

Blumberg, Amit, Rice, Edward J., Kundaje, Anshul, Danko, Charles G., Mishmar, Dan

Journal:

Genome Research

Year:

2017

Language:

english

File:

PDF, 1.48 MB

english, 2017

12

XX Disorder of Sex Development is associated with an insertion on chromosome 9 and downregulation of RSPO1 in dogs (Canis lupus familiaris)

Meyers-Wallen, Vicki N., Boyko, Adam R., Danko, Charles G., Grenier, Jennifer K., Mezey, Jason G., Hayward, Jessica J., Shannon, Laura M., Gao, Chuan, Shafquat, Afrah, Rice, Edward J., Pujar, Shashika

Journal:

Year:

2017

Language:

english

File:

PDF, 4.21 MB

english, 2017

13

Elevated circulating Th2 but not group 2 innate lymphoid cell responses characterize canine atopic dermatitis

FrÃ¼h, Simon P., Saikia, Mridusmita, Eule, Jeremy, Mazulis, Christina A., Miller, Julia E., Cowulich, Joby M., Oyesola, Oyebola O., Webb, Lauren M., Peng, Seth A., Cubitt, Rebecca L., Danko, Charles G

Journal:

Veterinary Immunology and Immunopathology

Year:

2020

Language:

english

File:

PDF, 3.14 MB

english, 2020

14

ER-positive breast cancer cells are poised for RET-mediated endocrine resistance

Horibata, Sachi, Rice, Edward J., Mukai, Chinatsu, Marks, Brooke A., Sams, Kelly, Zheng, Hui, Anguish, Lynne J., Coonrod, Scott A., Danko, Charles G., Ahmad, Aamir

Journal:

Year:

2018

Language:

english

File:

PDF, 8.74 MB

english, 2018

15

A Rapid, Extensive, and Transient Transcriptional Response to Estrogen Signaling in Breast Cancer Cells

Nasun Hah, Charles G. Danko, Leighton Core, Joshua J. Waterfall, Adam Siepel, John T. Lis, W. Lee Kraus

Journal:

Year:

2011

Language:

english

File:

PDF, 148 KB

english, 2011

16

Anti-PL-7 (Anti-Threonyl-tRNA Synthetase) Antisynthetase Syndrome

Labirua-Iturburu, Ane, Selva-O’Callaghan, Albert, Vincze, Melinda, Dankó, Katalin, Vencovsky, Jiri, Fisher, Benjamin, Charles, Peter, Dastmalchi, Maryam, Lundberg, Ingrid E.

Journal:

Medicine (Williams & Wilkins)

Year:

2012

Language:

english

File:

PDF, 202 KB

english, 2012

17

Common resistance mechanisms to deoxynucleoside analogues in variants of the human erythroleukaemic line K562

Charles Dumontet, Krystyna Fabianowska-Majewska, Danko Mantincic, Evelyne Callet Bauchu, Isabelle Tigaud, Varsha Gandhi, Michel Lepoivre, Godefridus J. Peters, Marie Odile Rolland, Dorota Wyczechowska

Journal:

British Journal of Haematology

Year:

1999

Language:

english

File:

PDF, 438 KB

english, 1999

18

A common pattern of DNase I footprinting throughout the human mtDNA unveils clues for a chromatin-like organization

Blumberg, Amit, Danko, Charles G., Kundaje, Anshul, Mishmar, Dan

Journal:

Genome Research

Year:

2018

Language:

english

File:

PDF, 4.88 MB

english, 2018

19

Further Evidence for Prejunctional GABA-B Inhibition of Cholinergic and Peptidergic Bronchoconstriction in Guinea Pigs: Studies with New Agonists and Antagonists

Chapman, Richard W., Danko, Gisela, Prado, Maurice del, Egan, Robert W., Kreutner, William, Rizzo, Charles A., Hey, John A.

Journal:

Year:

1993

File:

PDF, 1.41 MB

1993

20

Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers

Core, Leighton J, Martins, André L, Danko, Charles G, Waters, Colin T, Siepel, Adam, Lis, John T

Journal:

Nature Genetics

Year:

2014

Language:

english

File:

PDF, 1.40 MB

english, 2014

21

Simultaneous multiplexed amplicon sequencing and transcriptome profiling in single cells

Saikia, Mridusmita, Burnham, Philip, Keshavjee, Sara H., Wang, Michael F. Z., Heyang, Michael, Moral-Lopez, Pablo, Hinchman, Meleana M., Danko, Charles G., Parker, John S. L., De Vlaminck, Iwijn

Journal:

Year:

2018

Language:

english

File:

PDF, 6.54 MB

english, 2018

22

A Four-Year Review of Patients with Hepatitis C Antibody in Department of Veterans Affairs Facilities

Rosette, Gary A., Danko, Linda H., Mendenhatt, Charles L.

Journal:

Military Medicine

Year:

1997

File:

PDF, 1018 KB

1997

23

groHMM: a computational tool for identifying unannotated and cell type-specific transcription units from global run-on sequencing data

Chae, Minho, Danko, Charles G., Kraus, W. Lee

Journal:

BMC Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1.79 MB

english, 2015

24

Contrasting Roles of Transcription Factors Spineless and EcR in the Highly Dynamic Chromatin Landscape of Butterfly Wing Metamorphosis

van der Burg, Karin R.L., Lewis, James J., Martin, Arnaud, Nijhout, H. Frederik, Danko, Charles G., Reed, Robert D.

Journal:

Year:

2019

File:

PDF, 3.46 MB

2019

25

Identification of gene co-regulatory modules and associatedcis-elements involved in degenerative heart disease

Charles G Danko, Arkady M Pertsov

Journal:

BMC Medical Genomics

Year:

2009

Language:

english

File:

PDF, 3.38 MB

english, 2009

26

GAGA Factor Maintains Nucleosome-Free Regions and Has a Role in RNA Polymerase II Recruitment to Promoters

Fuda, Nicholas J., Guertin, Michael J., Sharma, Sumeet, Danko, Charles G., Martins, André L., Siepel, Adam, Lis, John T., Lieb, Jason D.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.24 MB

english, 2015

27

RTFBSDB: an integrated framework for transcription factor binding site analysis

Wang, Zhong, Martins, André L., Danko, Charles G.

Journal:

Year:

2016

Language:

english

File:

PDF, 294 KB

english, 2016

28

A Conceptual and Empirical Comparison of Alternative Household Life Cycle Models

Schaninger, Charles M., Danko, William D.

Journal:

Journal of Consumer Research

Year:

1993

Language:

english

File:

PDF, 1.09 MB

english, 1993

29

A bi-stable feedback loop between GDNF, EGR1, and ERα contribute to endocrine resistant breast cancer

Horibata, Sachi, Rice, Edward J., Zheng, Hui, Mukai, Chinatsu, Chu, Tinyi, Marks, Brooke A., Coonrod, Scott A., Danko, Charles G., Ahmad, Aamir

Journal:

Year:

2018

Language:

english

File:

PDF, 7.47 MB

english, 2018

30

Mammalian Heat Shock Response and Mechanisms Underlying Its Genome-wide Transcriptional Regulation

Mahat, Dig B., Salamanca, H. Hans, Duarte, Fabiana M., Danko, Charles G., Lis, John T.

Journal:

Year:

2016

Language:

english

File:

PDF, 6.25 MB

english, 2016

31

The H2BG53D oncohistone directly upregulates ANXA3 transcription and enhances cell migration in pancreatic ductal adenocarcinoma

Wan, Yi Ching Esther, Liu, Jiaxian, Zhu, Lina, Kang, Tze Zhen Evangeline, Zhu, Xiaoxuan, Lis, John, Ishibashi, Toyotaka, Danko, Charles G., Wang, Xin, Chan, Kui Ming

Journal:

Signal Transduction and Targeted Therapy

Year:

2020

File:

PDF, 1.18 MB

2020

32

Transforming growth factor b as a potential tumor progression factor among hyperdiploid glioblastoma cultures: Evidence for the role of platelet-derived growth factor

Mark T. Jennings, Charles E. Hart, Patricia A. Commers, James A. Whitlock, Danko Martincic, Robert J. Maciunas, Paul L. Moots, Thomas M. Shehab

Journal:

Journal of Neuro-Oncology

Year:

1997

Language:

english

File:

PDF, 644 KB

english, 1997

33

Poised for development

Choate, Lauren A, Danko, Charles G

Journal:

Nature Genetics

Year:

2016

Language:

english

File:

PDF, 274 KB

english, 2016

34

Corrigendum: Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution

Blumberg, Amit, Rice, Edward J., Kundaje, Anshul, Danko, Charles G., Mishmar, Dan

Journal:

Genome Research

Year:

2019

File:

PDF, 123 KB

2019

35

Chromatin Architecture of the Pitx2 Locus Requires CTCF- and Pitx2-Dependent Asymmetry that Mirrors Embryonic Gut Laterality

Welsh, Ian C., Kwak, Hojoong, Chen, Frances L., Werner, Melissa, Shopland, Lindsay S., Danko, Charles G., Lis, John T., Zhang, Min, Martin, James F., Kurpios, Natasza A.

Journal:

Year:

2015

Language:

english

File:

PDF, 3.36 MB

english, 2015

36

[ACM Press the Practice and Experience - Pittsburgh, PA, USA (2018.07.22-2018.07.26)] Proceedings of the Practice and Experience on Advanced Research Computing - PEARC '18 - Building a Science Gateway For Processing and Modeling Sequencing Data Via Apache Airavata

Wang, Zhong, Christie, Marcus A., Abeysinghe, Eroma, Chu, Tinyi, Marru, Suresh, Pierce, Marlon, Danko, Charles G.

Year:

2018

Language:

english

File:

PDF, 995 KB

english, 2018

37

Chromatin conformation remains stable upon extensive transcriptional changes driven by heat shock

Ray, Judhajeet, Munn, Paul R., Vihervaara, Anniina, Lewis, James J., Ozer, Abdullah, Danko, Charles G., Lis, John T.

Journal:

Proceedings of the National Academy of Sciences

Year:

2019

File:

PDF, 7.91 MB

2019

38

Dynamic evolution of regulatory element ensembles in primate CD4+ T cells

Danko, Charles G., Choate, Lauren A., Marks, Brooke A., Rice, Edward J., Wang, Zhong, Chu, Tinyi, Martins, Andre L., Dukler, Noah, Coonrod, Scott A., Tait Wojno, Elia D., Lis, John T., Kraus, W. Lee,

Journal:

Nature Ecology & Evolution

Year:

2018

Language:

english

File:

PDF, 2.17 MB

english, 2018

39

Physical confinement induces malignant transformation in mammary epithelial cells

Lu, Yen-Chun, Chu, Tinyi, Hall, Matthew S., Fu, Dah-Jiun, Shi, Quanming, Chiu, Alan, An, Duo, Wang, Longhai, Pardo, Yehudah, Southard, Teresa, Danko, Charles G., Liphardt, Jan, Nikitin, Alexander Yu,

Journal:

Year:

2019

Language:

english

File:

PDF, 3.96 MB

english, 2019

40

COMP-14. MOLECULAR PROFILING AND CELLULAR DECONVOLUTION OF GLIOBLASTOMA BRAIN TUMORS USING CHROMATIN RUN-ON AND SEQUENCING

Chu, Tinyi, Rice, Edward, Salamanca, Hans, Wang, Zhong, Longo, Sharon, Corona, Robert, Viapiano, Mariano, Chin, Lawrence, Danko, Charles

Journal:

Year:

2019

File:

PDF, 87 KB

2019

41

A unified architecture of transcriptional regulatory elements

Andersson, Robin, Sandelin, Albin, Danko, Charles G.

Journal:

Trends in Genetics

Year:

2015

Language:

english

File:

PDF, 752 KB

english, 2015

42

A Conceptual and Empirical Comparison of Alternative Household Life Cycle Models

Charles M. Schaninger and William D. Danko

Journal:

Journal of Consumer Research

Year:

1993

Language:

english

File:

PDF, 554 KB

english, 1993

43

Transcriptional response to stress is pre-wired by promoter and enhancer architecture

Vihervaara, Anniina, Mahat, Dig Bijay, Guertin, Michael J., Chu, Tinyi, Danko, Charles G., Lis, John T., Sistonen, Lea

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 2.80 MB

english, 2017

44

AlleleHMM: a data-driven method to identify allele specific differences in distributed functional genomic marks

Chou, Shao-Pei, Danko, Charles G

Journal:

Nucleic Acids Research

Year:

2019

Language:

english

File:

PDF, 1.03 MB

english, 2019

45

Hotspots of Aberrant Enhancer Activity in Fibrolamellar Carcinoma Reveal Candidate Oncogenic Pathways and Therapeutic Vulnerabilities

Dinh, Timothy A., Sritharan, Ramja, Smith, F. Donelson, Francisco, Adam B., Ma, Rosanna K., Bunaciu, Rodica P., Kanke, Matt, Danko, Charles G., Massa, Andrew P., Scott, John D., Sethupathy, Praveen

Journal:

Year:

2020

File:

PDF, 5.49 MB

2020

46

Bioinformatic identification of novel putative photoreceptor specificcis-elements

Charles G Danko, Vera A McIlvain, Maochun Qin, Barry E Knox, Arkady M Pertsov

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 2.86 MB

english, 2007

47

SAT0031 Anti-RO52 autoantibody epitope mapping in european cohort of myositis patients

Krystufkova, O., Dzikatite, V., Charles, P.J., Mann, H.F., Ekholm, L., Vincze, M., Putova, I., Kasprikova, N., Padyukov, L., Danko, K., Novota, P., Vencovsky, J., Wahren-Herlenius, M., Lundberg, I.E.

Journal:

Annals of the Rheumatic Diseases

Year:

2013

Language:

english

File:

PDF, 71 KB

english, 2013

48

Identification of active transcriptional regulatory elements from GRO-seq data

Danko, Charles G, Hyland, Stephanie L, Core, Leighton J, Martins, Andre L, Waters, Colin T, Lee, Hyung Won, Cheung, Vivian G, Kraus, W Lee, Lis, John T, Siepel, Adam

Journal:

Year:

2015

Language:

english

File:

PDF, 656 KB

english, 2015

49

Anti-Ro52 epitope mapping in inflammatory myopathies

Krystufkova, Olga, Dzikatite, Vijole, Charles, Peter, Mann, Herman F, Ekholm, Louise, Vincze, Melinda, Putova, Ivana, Kasprikova, Nikola, Novota, Peter, Padyukov, Leonid, Danko, Katalin, Vencovsky, Ji

Journal:

Annals of the Rheumatic Diseases

Year:

2012

Language:

english

File:

PDF, 61 KB

english, 2012

50

Gene Regulation by CcpA and Catabolite Repression Explored by RNA-Seq in Streptococcus mutans

Zeng, Lin, Choi, Sang Chul, Danko, Charles G., Siepel, Adam, Stanhope, Michael J., Burne, Robert A., Biswas, Indranil

Journal:

Year:

2013

Language:

english

File:

PDF, 1.47 MB

english, 2013

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